Aerith Omics

Omics in Soil & Gut & Microbiome & Plant

About Me

Contact Information

Name: Xiong Yi
Adress: Norman, OK 73072
Telephone: 14054064960
Email: yixiong@ou.edu


Education

08/2020 – The University of Oklahoma, major in microbiology
09/2017 – 09/2020 Institute of Soil Science, Chinese Academy of Sciences, MA in Plant Nutrition
09/2013 – 06/2017 Nanjing Agricultural University, BA in Agricultural Resources and Environment


Publications

Quincy P Collins, Michael J Grunsted, Dahiana Arcila, Yi Xiong, et al. “Transcriptomic analysis provides insight into the mechanism of IKKβ-mediated suppression of HPV18E6-induced cellular abnormalities.” G3: Genes, Genomes, Genetics. 2023

Zhang, Li, Karen R. Jonscher, Zuyuan Zhang, Yi Xiong, et al. Islet autoantibody seroconversion in type-1 diabetes is associated with metagenome-assembled genomes in infant gut microbiomes. Nature communications. 2022

Xiong Yi, Zheng Lu, Meng Xiangxiang, et al. Protein sequence databases generated from metagenomics and public database produced similar soil metaproteomic results of microbial taxonomic and functional changes. Pedosphere, 2021

Xiong Yi, Zhen Lu, Shen Renfang, et al. Effects of Nitrogen Deficiency on Microbial Community Structure in Rhizosphere Soil of Wheat. Acta Pedologica Sinica, 2021

Saha Prasenjit, Lin Fan, Sandra Thibivilliers, Xiong Yi, et al. Phenylpropanoid Biosynthesis Gene Expression Precedes Lignin Accumulation during Shoot Development in Lowland and Upland Switchgrass Genotypes. Frontiers in Plant Science, 2021

Yan Mingke, Xue Caiwen, Xiong Yi, et al. Proteomic dissection of the similar and different responses of wheat to drought, salinity and submergence during seed germination. Journal of Proteomics, 2020

Xiong Yi, Lin Xinmeng, Lan Ping. The development of soil protein extraction technology in soil metaproteomics. Soil, 2016

Hu Yitao, Xiong Yi, Jiang Shuaibing, et al. A kind of concentrated effervescent tablet of nutrient solution for hydroponic flowers. ZL201620230515.5.


Research Experience

13C-labeled Metagenomic research of rhizospheric microorganisms.

1
at the University of Oklahoma 2021.3-

13C-labeled Metagenomic and proteomic research of methane-oxidation microorganisms.

1
at the University of Oklahoma 2021.3-

Proteomic research of Vero cell line infected by COVID-19 virus.

1
at the University of Oklahoma 2021.2-2021.6

Development and enhancement of new functions of one proteomic mass spectrum analysis tool.

1
at the University of Oklahoma 2021.1- 

GWAS and the disease-related polygenic risk score estimate of the human genome.

1
at the University of Oklahoma 2021.1-2021.6 

Teaching assistant in microbiology.

1
at the University of Oklahoma 2021.1-2021.6

Microbial metagenomic research of the human gut about type 1 diabetes. Published one paper.

1
at the University of Oklahoma 2020.10-2021.6 

Metagenomic research of soil microbes under warming and flux balance analysis.

1
at the University of Oklahoma 2020.10-2021.1 

Soil and Rhizospheric microbial metaproteogenomic research under nitrogen an phosphorus deficiency. Published three papers.

1
at the Institute of Soil Science, Chinese Academy of Science 2015.6-2020.9

Transcriptomic and proteomic research of wheat under abiotic stress. Published one paper.

1
at the Institute of Soil Science, Chinese Academy of Science 2019.5-2020.3

Genome resequencing, SNP calling, transcriptomic, and proteomic research of Arabidopsis phosphatase mutant.

1
at the Institute of Soil Science, Chinese Academy of Science 2018.10-2019.2 

Coding Skills

R

Statistics, database maintenance, visualization, package development, familiar with time-series model and generalized linear model

C, C++, C#

Development of proteomic mass spectrum data analysis tool, GUI development by QT, Rcpp

Python

Statistics, website development, web spider, machine learning

Linux

Server maintenance, shell script

Java

Biological sequence analysis, GUI development by JavaFX


Experimental Skills

Plant and soil related experimental skills
Skilled in DNA/RNA extraction from plant and soil, assay of enzyme activity, PCR, qPCR, vector construction, and measurement of the content of elements and other basic physical or chemical properties of plants and soil.
Proteomics related experimental skills
Skilled in operating and routine maintenance of LC-MS/MS, proteomics-related software (MaxQuant, Proteome Discoverer, Skyline), extraction of plant and soil proteins, digestion by trypsin, desalting, SDS-PAGE, and western blot.


Academic Record

GPA 3.8
TOEFL 100
GRE 317


Awards

2023 Kenneth and Joye Harwell scholarship
2017 Chinese Academy of Sciences Scholarship
2015 National Encouragement Scholarship